Sit-MIR169n

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
                ATCA   T   -         T    T       ---------    C   C    -   TGCA
      ATAAGGGCTG    TCC GGT AGCCAAGGA GACT GCCTGTG         GCCT CCT GCTC GCT    
      ||||||||||    ||| ||| ||||||||| |||| |||||||         |||| ||| |||| |||     
      TATTCTTGGC    AGG CCG TCGGTTCCT CTGA CGGATAC         CGGA GGA CGAG TGG    
ACTTCC          ----   T   A         -    -       TCTAGTCAA    C   -    G   TTTT

miRNA cluster info.

miRNA locus ID miRNA locus accession Chromosome Strand Start End
Sit-MIR169l ,   Sit-MIR169m ,   Sit-MIR169n PmiREN018667, PmiREN018668, PmiREN018669 Sit-scaffold_6 + 33994504 34001127

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

Seita.5G055500.1 1.0 NA NA
Seita.5G055600.1 1.0 1 NA
Seita.9G010300.1 1.0 NA NA
Seita.1G338100.1 2.0 1 NA
Seita.2G383900.1 2.0 NA NA
Seita.3G390000.1 2.0 NA NA
Seita.9G155700.1 2.0 NA NA
Seita.9G367200.1 2.0 NA NA
Seita.9G521100.1 2.0 2 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference