miRai+

Plant MicroRNA ENcyclopedia 3.0

miRNA
miRNA
Target
Species
Examples: Ath-miR156 AT2G42200.1 Arabidopsis thaliana
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87,667
miRNA loci
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340
Plant taxa
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1,107,377
miRNA-target pairs
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5,319
sRNA-seq datasets

Species Shortcut

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Arabidopsis thaliana
Arabidopsis thaliana
thale cress
513 miRNAs
Oryza sativa
Oryza sativa
rice
1081 miRNAs
Solanum lycopersicum
Solanum lycopersicum
tomato
831 miRNAs
Zea mays
Zea mays
maize
609 miRNAs
Setaria italica
Setaria italica
foxtail millet
105 miRNAs
Gossypium hirsutum
Gossypium hirsutum
cotton
885 miRNAs
Sorghum bicolor
Sorghum bicolor
sorghum
353 miRNAs
News News
View more →
PmiREN 3.0 released! 2026-06-01
miRai+: AI-assisted exploration of plant miRNA knowledge 2026-05-15
DNA and RNA Modification Data Added to PmiREN 2026-02-01
Primary miRNA Annotations Added to PmiREN 2025-11-01
Citation Citation

If you use PmiREN in your scientific research, please cite us:

PmiREN 3.0
PmiREN3.0: a multi-omics integrated and AI-assisted encyclopedia for plant microRNA research. Manuscript in preparation
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PmiREN 2.0
Guo, Z., et al. PmiREN2.0: from data annotation to functional exploration of plant microRNAs. Nucleic Acids Res. 2022. 50, D1475-D1482.
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PmiREN 1.0
Guo, Z., et al. PmiREN: a comprehensive encyclopedia of plant miRNAs. Nucleic Acids Res. 2020. 48, D1114–D1121.
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