PmiREN: Plant microRNA Encyclopedia

Ath-MIR845b

Basic info.

miRNA locus ID
Ath-MIR845b

miRNA locus accession
PmiREN000809

Organism
Arabidopsis thaliana

Genomic location
Ath-Chr4 12214066 12214170 -

Comments
A member of family MIR845

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

ATC     --        CA        - C         A    ATGATGTAT
   AGTCG  GTTTCCAT  CGTCAATT G TATCAGAGC ACGC         
   |||||  ||||||||  |||||||| | ||||||||| ||||          
   TTAGC  CAAAGGTA  GTAGTTAA C ATAGTCTCG TGCG         
GTT     TA        AC        A C         C    AATCAATAA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID: 3171
Chromosome: Ath-Chr4
Cluster start: 12214066
Cluster end: 12217535

miRNA locus ID	miRNA locus accession	Chromosome	Strand	Start	End
Ath-MIR845a , Ath-MIR845b	PmiREN000808, PmiREN000809	Ath-Chr4	-	12214066	12217535

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
AT1G19910.1	NA	NA	2 (3)
AT3G22420.2	NA	NA	2 (2)
AT4G05070.1	NA	NA	2 (3)
AT4G26000.1	NA	NA	2 (1)
AT5G57800.1	NA	NA	2 (3)

Mature miRNA conservation

Link

Reference

>Microsynteny and phylogenetic analysis of tandemly organised miRNA families across five members of Brassicaceae reveals complex retention and loss history. Plant Sci, 2016