Ath-MIR168b

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
   AG     GG   T   G      C          T     ACTGATTG   G  --      A    TCT
     TTACC  CGG CTC GATTCG TTGGTGCAGG CGGGA        GCT AC  ACCGAC CGTG   
     |||||  ||| ||| |||||| |||||||||| |||||        ||| ||  |||||| ||||    
     AGTGG  GCC GAG CTAAGT AACTATGTTC GCCCT        CGA TG  TGGTTG GTAC   
AAAAA     -A   T   G      C          T     --------   G  TT      -    TGT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

Syntenic block ID miRNA locus 1 miRNA locus 1 position Organism miRNA locus 2 miRNA locus 2 position
SY-168 Aly-MIR168a Aly-scaffold_7: 10245612-10245757 - Arabidopsis thaliana Ath-MIR168b Ath-Chr5: 18358783-18358913 -
SY-180 Aly-MIR168b Aly-scaffold_8: 2067209-2067339 + Arabidopsis thaliana Ath-MIR168b Ath-Chr5: 18358783-18358913 -
SY-536 Ath-MIR168a Ath-Chr4: 10578632-10578777 + Arabidopsis thaliana Ath-MIR168b Ath-Chr5: 18358783-18358913 -
SY-546 Ath-MIR168b Ath-Chr5: 18358783-18358913 - Brassica oleracea Bol-MIR168a Bol-C07: 24398324-24398464 +
SY-547 Ath-MIR168b Ath-Chr5: 18358783-18358913 - Brassica oleracea Bol-MIR168c Bol-C09: 7067563-7067703 -
SY-548 Ath-MIR168b Ath-Chr5: 18358783-18358913 - Brassica rapa Bra-MIR168a Bra-A06: 28106605-28106745 +
SY-549 Ath-MIR168b Ath-Chr5: 18358783-18358913 - Brassica rapa Bra-MIR168f Bra-A09: 13356294-13356434 -
SY-550 Ath-MIR168b Ath-Chr5: 18358783-18358913 - Capsella rubella Cru-MIR168a Cru-scaffold_7: 8258806-8258945 -
SY-551 Ath-MIR168b Ath-Chr5: 18358783-18358913 - Capsella rubella Cru-MIR168b Cru-scaffold_8: 1121379-1121509 +
SY-552 Ath-MIR168b Ath-Chr5: 18358783-18358913 - Eutrema salsugineum Esa-MIR168b Esa-scaffold_1: 8872731-8872872 -
SY-553 Ath-MIR168b Ath-Chr5: 18358783-18358913 - Eutrema salsugineum Esa-MIR168c Esa-scaffold_20: 1047212-1047352 -

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

AT5G36230.1 4.0 NA 2 (1)
AT3G63310.1 NA NA 2 (1)
AT4G03140.1 NA NA 2 (2)
AT4G15490.1 NA NA 2 (1)
AT5G03220.1 NA NA 2 (2)
AT5G43320.1 NA NA 2 (3)

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference