PmiREN: Plant microRNA Encyclopedia

Stu-MIR6026

Basic info.

miRNA locus ID
Stu-MIR6026

miRNA locus accession
PmiREN024517

Organism
Solanum tuberosum

Genomic location
Stu-ST4.03ch01 1694801 1695044 +

Comments
A member of family MIR6026

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

     TGAC     TT                ATT       C    CT C              A T         --ATTG         T      -     T TAACTTATTTTTCTTT     AA
         CACTT  ATTTGGTAATACAACT   GCCAAGA AATG  T ATTATAAGTGCATA C TTTCACTTT      TTTGAGCAT GTGTTG ATTTC C                GAACA  
         |||||  ||||||||||||||||   ||||||| ||||  | |||||||||||||| | |||||||||      ||||||||| |||||| ||||| |                |||||   
         GTGAA  TGAACCGTTATGTTGA   CGGTTCT TTAT  A TAATGTTTACGTAT G AAAGTGAGA      AGACTCGTA CACAAC TAAAG G                TTTGT  
GTTAATTTT     -C                GAT       T    AT T              C T         GATTGA         C      G     C ---------CTACTTT     TA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure
Get miRNA stem-loop ± 500bp
Get miRNA Promoter

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
PGSC0003DMT400015954	1.5	NA	NA
PGSC0003DMT400018693	2.0	NA	NA

Mature miRNA conservation

Link

Reference

No reference

Stu-MIR6026

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