Vvi-MIR159c

Basic info.

• miRNA locus ID
• Vvi-MIR159c

• miRNA locus accession
• PmiREN020345

• Organism
• Vitis vinifera

• Genomic location
• Vvi-chr17  2609195  2609404  -

• Comments
• A member of family MIR159

• Confidence level
• 

Secondary strurture and sequence

  -AAT     -TTTT  A            GA       TA        -T   -      AT  -    G    CT    G TC      C       --C   AAT
GA    TAGGG     GG GTGGAGCTCCTT  AGTCCAA  GAGGGTCT  ACT GGGTAG  TG AGCT CTGA  TATG A  CCACAG CCTATCC   GTC   
||    |||||     || ||||||||||||  |||||||  ||||||||  ||| ||||||  || |||| ||||  |||| |  |||||| |||||||   |||   G
CT    GTCTC     CC CATCTCGAGGGA  TTAGGTT  TTCCTAGA  TGA CCTATT  AC TCGA GACT  ATAC T  GGTGTT GGATAGG   CGG   
  ACCT     TCTCT  A            AG       TG        TT   A      --  G    G    CT    G TC      C       TTA   GGG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure
• Get miRNA stem-loop ± 500bp
• Get miRNA Promoter

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

miRNA syntenic block

Expression info.

Mature miRNA expression [+]

star miRNA expression [+]

Target gene info.[+]

Link

• Link To miRbase
• Link To PNDB

Reference

• No reference