Vvi-MIR156e

Basic info.

Secondary strurture and sequence

mature sequence    star sequence
5'



3'
      CTATAG     TAT  TA         --  A          T  T   TCTT   TT    -  AG
            GTTTG   GG  GGTGACAGA  GG GAGTGAGCAC CA GGT    TTC  GCAT GA  
            |||||   ||  |||||||||  || |||||||||| || |||    |||  |||| ||   
            CGAAC   CC  CCACTGTCT  CC CTCATTCGTG GT TCG    AAG  CGTA CT  
TCTCTCTCTCTA     --T  --         AT  -          T  C   ----   TT    T  TT

miRNA cluster info.

No miRNA locus in ± 10k bp interval.

miRNA syntenic block

No syntenic block.

Expression info.

Mature miRNA expression [+]

Reads per million (RPM)

star miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

Target gene ID psRNAtarget RNAhybrid PARE-Seq?

The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.

VIT_201s0010g03710.5 1.5 1 NA
VIT_201s0010g03910.2 1.5 1 NA
VIT_201s0011g00130.1 1.5 1 NA
VIT_208s0007g06270.1 1.5 1 NA
VIT_211s0065g00170.3 1.5 1 NA
VIT_215s0021g02290.1 1.5 1 NA
VIT_217s0000g01260.1 1.5 1 NA
VIT_217s0000g05020.1 1.5 1 NA
VIT_214s0068g01780.1 2.0 2 NA

Mature miRNA conservation

?

Mature miRNA conservation

    Link

    Reference